I organize mine pretty much the same as Paul_K except starting with return to rav and theros i've started to keep my blocks together as opposed to sets. This is as i lean alittle more to organized play than casual/collector. Also ive kept all my cards in the ultra pro clear polypropylene sleeves. This started from the get go with me as i kept my decks in them before deck sleeves came around and were popular. This allowed me to pull cards from my collection and not have to sleeve them as they already were. I've kept up on this as my collection has grown and i'm glad b/c as ive gotten older and moved around occasionally i've had to store them in less than idea conditions with minimal loss of cards due to moisture, etc. I know this is an added expense and definitely a time consuming chore if your collection is large but i will order sleeves prior to or along with a booster box just to make sure i have enough.
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